PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G0997
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 515aa    MW: 56646.6 Da    PI: 9.9187
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G0997genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000157696323
                 ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                 C++C+k F r  nL+ H r H
  Gh_A09G0997 76 CEICNKGFQRDQNLQLHRRGH 96
                 *******************88 PP

2zf-C2H211.80.00073150172123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k +  +s+ k H + +
  Gh_A09G0997 150 WKCEKCSKKYAVQSDWKAHSKIC 172
                  58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.05E-77396No hitNo description
Gene3DG3DSA:3.30.160.602.4E-57396IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.117496IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8247496IPR007087Zinc finger, C2H2
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
SMARTSM00355100115145IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-4138171IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.05E-7145170No hitNo description
SMARTSM00355140150170IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MMSHDGISNS IPSTIRGLTQ QPNPNPNPTL SVNPSKKKRN LPGTPGKSVN FHSSDPDAEV  60
IALSPKSLMA TNRFLCEICN KGFQRDQNLQ LHRRGHNLPW KLKQRTNKEV RKKVYICPEK  120
TCVHHDPSRA LGDLTGIKKH FSRKHGEKKW KCEKCSKKYA VQSDWKAHSK ICGTREYRCD  180
CGTLFSRKDS FITHRAFCDA LAEESGRFTS VSTTTMNPSA FTNDLTHIGG ADNYETGFRP  240
EFAAGSELVD NGLQKPRLQL WLDQANSQLN PIGIQSNANA FLAPKSTSLP ELGIAAAPMN  300
MFGSLSQSQQ WLSQYPQASF PGANLSMSSA LQRGPKQEEN KGDLSESITS LYSNNTQNSL  360
RQNHTHMSAT ALLQKAAQMG STRSNPTITN SGLFGLMSSP PSTIPSPIND HNKNEAYYKL  420
FKQANQSENI NEVVSSLPST QAAIIKDGSF VNNASMKANE RQGGQAVASK LNTNANEVEA  480
SLTRDFLGVG SQSSRPFFQQ EFAKFASMGS VQPWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100112KLKQRTNKEVRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5775696e-95JX577569.1 Gossypium hirsutum clone NBRI_GE9421 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485236.10.0PREDICTED: protein indeterminate-domain 9
SwissprotQ944L31e-117IDD9_ARATH; Protein indeterminate-domain 9
TrEMBLA0A0D2RUM30.0A0A0D2RUM3_G
STRINGVIT_06s0004g03070.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-105C2H2-like zinc finger protein